Ascension--X-Files, Season 2, Episode 6

 Agent Fox Mulder races to Agent Dana Scullys house after listening to the recording of her attack on his answering machine.  Duane Barry(Steve Railsback)has kidnapped Scully, determined to offer her to the aliens in his place. As Mulder is involved in a high speed pursuit in a cable car, Krycek attempts to kill him to prevent him from rescuing his partner.

One Breath--X-Files, Season 2, Episode 8

After Being  kidnapped Scullys  family believes her to be dead. Mulder  refuses to give up hope, and Scully later mysteriously turns up in the hospital, in a bad state and close to death. She is comatose and on medical  life support, but the doctor reveals that her living will very specifically requests that she not be kept alive artificially.

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